Run statistics ⓘ

MeasureValue
Report name ToulligQC Demo Data
Experiment groupUnknown
Sample IDSmartLengthMinION_A2018
Run ID39962aa0f19fcb4b023f9e88caa032ff9cfbfd26
Run dateWed Aug 01 13:42:54 UTC 2018
Run duration 47h59m58s
Flowcell IDFAJ06689
Flowcell product codeUnknown
Flowcell versionUnknown
KitUnknown
Sequencing kitsqk-lsk108
Barcode kitsUnknown
Yield7.62G
Read count2,932,487
N50 (bp)3,230
L502,063,112

Device and software ⓘ

MeasureValue
Device typeminion
Device IDMN17734
Device hostnamednacpc14
Device OSubuntu 14.04
Distribution versionUnknown
MinKNOW version1.11.5
Basecaller nameguppy-basecalling
Basecaller version3.2.4+d9ed22f
Basecaller analysis1d_basecalling
Basecalling dateWed Sep 04 07:56:30 UTC 2019
Model filetemplate_r9.4.1_450bps_fast.jsn
Min qscore threshold7.00
ToulligQC version2.3
All reads Pass reads Fail reads Pass barcoded reads Fail barcoded reads
count 2,932,487 2,596,388 336,099 2,459,779 85,227
percent 100.00 88.54 11.46 83.88 2.91
All reads Pass reads Fail reads
count 2,932,487 2,596,388 336,099
mean 2,598.87 2,668.29 2,062.59
std 1,434.31 1,426.18 1,382.75
min 7.00 100.00 7.00
25% 1,559.00 1,646.00 951.00
median 2,366.00 2,442.00 1,898.00
75% 3,488.00 3,557.00 2,885.00
max 44,486.00 44,486.00 22,606.00
All reads Pass reads Fail reads
count 2,932,487 2,596,388 336,099
mean 9.76 10.34 5.25
std 2.03 1.24 1.02
min 2.16 7.00 2.16
25% 8.96 9.59 4.57
median 10.36 10.56 5.23
75% 11.17 11.26 6.07
max 16.44 16.44 6.00
Barcode arrangement (%) Read count Base count
barcode01 11.60% 301,092 792,229,661
barcode02 22.61% 586,981 1,659,382,337
barcode03 10.90% 282,933 757,317,615
barcode04 26.38% 684,838 1,799,063,466
barcode05 13.99% 363,340 1,017,818,978
barcode07 9.27% 240,595 582,580,315
unclassified 4.99% 129,647 302,504,364
other barcodes 0.27% 6,962 17,017,665
Barcode arrangement (%) Read count Base count
barcode01 3.44% 11,560 23,610,570
barcode02 6.27% 21,080 47,691,876
barcode03 2.91% 9,779 21,001,498
barcode04 7.09% 23,838 50,891,528
barcode05 3.32% 11,172 25,866,485
barcode07 2.32% 7,798 14,994,688
unclassified 74.30% 249,723 506,695,118
other barcodes 0.34% 1,149 2,482,806